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Title:MULTIMEDIJSKA PREDSTAVITEV GLOBALNE PORAVNAVE DVEH NIZOV
Authors:ID Bajković, Radovan (Author)
ID Podgorelec, David (Mentor) More about this mentor... New window
Files:.pdf UNI_Bajkovic_Radovan_2011.pdf (3,55 MB)
MD5: E2622C9006D66BC52EB1A022CFCFD2E3
PID: 20.500.12556/dkum/4beea5ce-31c2-4bac-8b4e-b2ecb8a4a715
 
Language:Slovenian
Work type:Bachelor thesis/paper
Organization:FERI - Faculty of Electrical Engineering and Computer Science
Abstract:V diplomskem delu smo preučili in implementirali algoritem Needlemana in Wunscha za globalno poravnavo dveh nizov. Seznanili smo se s pojmi: DNK, sekvenca genov, problem turista na Manhattnu, urejevalna razdalja, poravnava nizov ter najdaljši skupni podniz, ki so ključnega pomena za razumevanje implementiranega algoritma. Implementirana aplikacija je načrtovana kot elektronsko učno gradivo. Je interaktivna, saj uporabniku omogoča različne možnosti, kot so prekinitev in nadaljevanje izvajanja algoritma, vnos vrednosti v ocenjevalno matriko ter seveda vnos samih nizov za poravnavo, in multimedijska, saj poleg tekstovnega ponuja tudi grafični prikaz rezultatov in animacijo v realnem času. Preučili smo tudi lokalno poravnavo nizov, s katero bi lahko razširili aplikacijo v prihodnosti.
Keywords:globalna poravnava, primerjava nizov, algoritmi bioinformatike, multimedijska predstavitev
Place of publishing:Maribor
Publisher:[R. Bajković]
Year of publishing:2011
PID:20.500.12556/DKUM-20587 New window
UDC:004.45:004.738.5(043.2)
COBISS.SI-ID:15668246 New window
NUK URN:URN:SI:UM:DK:VFJIXRP0
Publication date in DKUM:26.09.2011
Views:2109
Downloads:179
Metadata:XML DC-XML DC-RDF
Categories:KTFMB - FERI
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Secondary language

Language:English
Title:MULTIMEDIA PRESENTATION OF PAIRWISE GLOBAL ALIGNMENT OF SEQUENCES
Abstract:In the diploma work we have studied and implemented Needleman-Wunsch algorithm for global alignment of two sequences. We have got acquainted with the terms: DNK, gene sequence, the problem of a tourist in Manhattan, edit distance, sequence alignment and the longest common subsequence, which are of key importance for understanding the implementing algorithm. The implemented application is designed as e-learning material. It is interactive as it allows different possibilities for the user such as interruption or continuation of algorithm execution, data input in evaluation matrix and input of sequences for alignment. It is also a multimedia application, because it offers textual and graphic display of results and animation in real-time. We have also studied local sequence alignement, that could be used for application expansion in future.
Keywords:global alignment, comparison of sequences, bioinformatics algorithms, multimedia presentation


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