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Title:Optimization of cultivation conditions for mammalian cell lines producing complex biosimilars
Authors:ID Strnad, Jure (Author)
ID Kravanja, Zdravko (Mentor) More about this mentor... New window
Files:.pdf DR_Strnad_Jure_2011.pdf (6,72 MB)
MD5: CDF833425735833E7857C33741A609F7
PID: 20.500.12556/dkum/f92837af-10ac-40b7-9437-8de478f1880d
 
Language:English
Work type:Dissertation
Organization:FKKT - Faculty of Chemistry and Chemical Engineering
Abstract:EXTENDED ABSTRACT The possibility to replace standard single use 250 mL shake flasks with single use 50 mL spin tubes was investigated using the design of experiments methodology. Experimental throughput could be tripled to a maximum of 120 spin tubes per shaker-incubator unit if similar process performance could be proven in shake flasks and spin tubes. A D-optimal response surface design was used to model titer values in a seven day batch process producing recombinant erythropoietin. Shaking rate and working volume in spin tubes were adjusted to simulate titers that are produced in shake flasks at the reference setting. Research results indicated that equivalent titers as in shake flasks at the reference setting can be produced in spin tubes; moreover, even higher titers are possible. The maximal titers in spin tubes reached values as observed in 6 L bioreactors. Furthermore, a comparison of process performance and product quality attributes between two spin tube settings, the reference shake flask setting, a standard bioreactor run and a bioreactor run without pH control was made. Process performance and product quality attributes in spin tubes at the equality setting (shaking rate of 180 rpm and 30 mL working volume) were comparable to the ones derived from the reference shake flask setting. Results derived for both bioreactor runs were not fully comparable to the spin tube and shake flask systems. The statistical model for calculating titers on day seven of a batch process in spin tubes was successfully validated and can be used for titer prediction in the proposed design space. The optimized spin tube settings were further used in a repetitive batch process where in the harvest phase of the process medium was daily exchanged to prevent component depletion or build-up of inhibitors. Spin tubes and shake flasks were used to simulate the industrial process of erythropoietin production. The effect of process mode change from seven-day batch to repetitive batch was investigated on process performance and product quality attributes, such as isoform distribution and glycan group distribution. Spin tube performance at the equality setting was comparable to the shake flask performance also in the repetitive batch process. Performance, especially titers at the maximal titer spin tube setting was, however, not fully comparable to the results obtained in previous optimization experiments. The spin tube equality setting was also used for cultivating two cell lines producing different monoclonal antibodies. The goal was to investigate how different cell lines influence process performance and product quality attributes, such as monoclonal antibody charge variant distribution and glycan group distribution. Both cell lines were derived from a Chinese hamster ovary parental cell line, therefore, it was proposed that maybe the optimal spin tube setting derived for the erythropoietin producing cell line, which was also derived from the Chinese hamster ovary parental cell line, could also be used for these subtypes. Cell growth of the monoclonal antibody producing cell lines was extensively better as observed for the erythropoietin producing cell line, which meant that culture demands were more pronounced, such as oxygen transfer or mass transfer. It was observed that the erythropoietin derived equality spin tube setting did not produce similar process responses as shake flask at the reference setting for both monoclonal antibodies. The foremost difference was that the metabolite lactate was being consumed in shake flasks after it reached a maximum value but was not consumed in spin tubes for both monoclonal antibody producing cell lines. In these experiments also amino acid time profiles during a seven day batch process were monitored and subsequently compared. It was seen that several amino acids seemed to be in excess as most of them were only half way consumed. Product quality attributes also differed between the spin tube and the shake flask setting. The conclusion of the experimental work was that some fine tuning of th
Keywords:design of experiments, spin tube, shake flask, optimization, erythropoietin, monoclonal antibodies
Place of publishing:[Maribor
Publisher:J. Strnad]
Year of publishing:2011
PID:20.500.12556/DKUM-21702 New window
UDC:66
COBISS.SI-ID:259555072 New window
NUK URN:URN:SI:UM:DK:130VUOT8
Publication date in DKUM:22.12.2011
Views:3981
Downloads:225
Metadata:XML DC-XML DC-RDF
Categories:KTFMB - FKKT
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Secondary language

Language:Slovenian
Title:Optimizacija gojitvenih pogojev pri izboru sesalskih celičnih linij za proizvodnjo kompleksnih bioloških zdravil
Abstract:RAZŠIRJENI POVZETEK Veliko raziskav v farmacevtski industriji se na laboratorijskem nivoju izvaja v sterilnih 250 mL erlenmajericah za enkratno uporabo. Te stožčasto oblikovane gojitvene posode zasedejo veliko prostora v stresalnikih in s tem omejujejo število sočasnih poizkusov. Raziskali smo možnost, da se erlenmajerice zamenjajo s sterilnimi 50 mL centrifugirkami za enkratno uporabo, saj bi se lahko s tem število možnih poizkusov za trikrat povečalo. S pomočjo metodologije načrtovanja poizkusov smo izdelali statistični model odvisnosti titra od frekvence stresanja in delovne prostornine v centrifugirkah za sedemdnevni šaržni proces pridobivanja eritropoietina. Pri raziskovalnem delu smo uporabili D-optimalni načrt, ki omogoča podajanje linearnih omejitev na dopustno območje. Poiskali smo dve optimalni rešitvi: prvo, kjer je vrednost titra produkta enaka kot v erlenmajericah pri referenčni nastavitvi, in drugo, kjer je titer maksimalen. Ugotovili smo, da je možno v centrifugirkah doseči podobne vrednosti titrov kot v erlenmajericah, ter da so istočasno nekatere vrednosti strukturnih kazalnikov molekule podobne med obema sistemoma. Pri nastavitvi, kjer so se pojavili najvišji titri so ti bili primerljivi celo s temi, ki smo jih izmerili v 6 L bioreaktorjih, a so bile vrednosti strukturnih kazalnikov molekule različne. Statistični model za titer na sedmi dan šaržnega gojenja smo validirali z novimi poizkusi, katere smo istočasno uporabili za primerjavo strukturnih kazalnikov molekule med obema nastavitvama centrifugirk, referenčno nastavitev za erlenmajerice in dvema bioreaktorskima poizkusoma, kjer se pri drugem poizkusu ni uravnaval pH. Vrednosti strukturnih kazalnikov molekule so se razlikovali med bioreaktorji in centrifugirkami ter erlenmajericami. Izdelani statistični model je možno uporabiti za napoved titrov v sedemdnevnem šaržnem procesu pridobivanja eritropoietina. Obe optimalni nastavitvi za centrifugirke smo uporabili pri simulaciji industrijskega procesa pridobivanja eritropoietina, kjer smo zaporedno izvajali šaržni procesi z dnevno izmenjavo gojišča, celična kultura se je ves čas ohranjala. Raziskali smo vpliv spremembe procesnega ustroja iz sedemdnevnega šaržnega do šaržnega s ponovitvami na gojitvene karakteristike in na vrednosti strukturnih kazalnikov molekule, kot so npr. porazdelitve izoform in porazdelitve glikanskih skupin. Cilj raziskovalnega dela je bilo ugotoviti, ali so rezultati med centrifugirkami in erlenmajericami še vedno primerljivi, če se ohranijo optimalne nastavitve frekvence stresanja in delovne prostornine, a se spremeni procesni ustroj. Izkazalo se je, da se kljub spremembi procesnega ustroja, primerljivost med sistemoma ni bistveno spremenila. Poleg tega je bilo ugotovljeno, da statistični model pri nastavitvi za maksimalne titre v centrifugirkah ne ustreza popolnoma, kadar spremenimo procesni ustroj. Nastavitev, kjer se proizvedejo podobni titri v centrifugirkah kot v erlenmajericah pri referenčni nastavitvi, smo uporabili za poizkuse, kjer smo gojili celični liniji, ki proizvajata monoklonska protitelesa. Potrebno je bilo ugotoviti, ali se primerljivost obeh gojitvenih sistemov spremeni, če se pri poizkusih uporabijo druge celične linije, ki proizvajajo dokaj različne molekule kot pri prvotnih poizkusih. V osnovi vse tri celične linije, ki so bile uporabljene v poizkusih, izvirajo iz matične kulture ovarijskih celic kitajskih hrčkov, a se jih uvršča v različne podtipe. Predpostavljali smo, da kljub temu, da so se v poizkusih uporabili različni podtipi ovarijskih celic kitajskih hrčkov, bi se podobnost gojitvenih sistemov lahko morda ohranila. Ugotovili smo, da je rast celičnih linij, ki proizvajata monoklonska protitelesa veliko bolj poudarjena kot v primeru celične linije, ki proizvaja eritropoietin. Optimalna nastavitev frekvence stresanja in delovne prostornine ugotovljena za celično linijo, ki proizvaja eritropoietin, v primeru drugih dveh celičnih linij ni omogočala podobnih rezultatov. Opaziti je bilo
Keywords:načrtovanje poizkusov, centrifugirke, erlenmajerice, optimizacija, eritropoietin, monoklonska protitelesa


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