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Title:A novel tool for virus detection in plant samples using siRNA-seq
Authors:ID Kotiščak, Jelena (Author)
ID Gorenjak, Mario (Mentor) More about this mentor... New window
ID Bianchi, Valerio (Comentor)
Files:.pdf MAG_Kotiscak_Jelena_2022.pdf (1,50 MB)
MD5: D4C5F35D369625565372522F15E33379
 
Language:English
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:FZV - Faculty of Health Sciences
Abstract:Plant viruses and viral infections in crops significantly adversely affect crop yields and decrease fruit quality, leading to significant economic losses and posing a threat to sustainable global cultivation (Rubio, et al., 2020). To this extent, early identification of viral infections in plants is essential, and it is a significant step towards preventing the spread of the infection and thriving and healthy crop production. Next-generation sequencing (NGS) has moved the limitations of sequencing technologies allowing rapid, affordable, and accurate sequencing and opening new genomic knowledge to researchers (Cullum, et al., 2010).
Keywords:Bioinformatic, phytopathology, virology, deep sequencing
Place of publishing:Maribor
Publisher:[J. Kotiščak]
Year of publishing:2022
PID:20.500.12556/DKUM-82900 New window
UDC:575.112:581.2(043.2)
COBISS.SI-ID:145476611 New window
Publication date in DKUM:21.04.2026
Views:180
Downloads:5
Metadata:XML DC-XML DC-RDF
Categories:FZV
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Licences

License:CC BY-NC-ND 4.0, Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
Link:http://creativecommons.org/licenses/by-nc-nd/4.0/
Description:The most restrictive Creative Commons license. This only allows people to download and share the work for no commercial gain and for no other purposes.
Licensing start date:07.09.2022

Secondary language

Language:Slovenian
Title:Novo orodje za detekcijo virusov v rastlinskih vzorcih z uporabo sirRNA-seq
Abstract:Rastlinski virusi in virusne okužbe v pridelkih znatno negativno vplivajo na pridelek in zmanjšajo kakovost sadja, kar vodi do znatnih gospodarskih izgub in predstavlja grožnjo trajnostnemu svetovnemu pridelovanju (Rubio, et al., 2020). V tem smislu je zgodnje odkrivanje virusnih okužb v rastlinah bistvenega pomena in je pomemben korak k preprečevanju širjenja okužbe ter uspešni in zdravi pridelavi pridelkov. Sekvenciranje naslednje generacije (NGS) je premaknilo omejitve tehnologij sekvenciranja, kar omogoča hitro, cenovno dostopno in natančno sekvenciranje ter raziskovalcem odpira novo genomsko znanje (Cullum, et al., 2010)
Keywords:Bioinformatika, fitopatologija, virologija, globoko sekvenciranje


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