Statistics of DKUM

Bibliography of the person, including all types of documents, not only theses.

PhD theses (1)

1. Sebastjan Kralj: Razvoj in uporaba metod računalniške kemije pri načrtovanju terapevtskih sredstev proti COVID-19

MSc theses (2)

1. Katja Gole: Primerjava proteomov glavnih predstavnikov virusov iz družine Filoviridae in identifikacija potencialnih vezavnih mest za načrtovanje ligandov
2. Žan Smrekar: Študij vezave peptidov na Fc regije protiteles

BSc theses (9)

1. Aljoša Poš: Analiza glikoproteina (gp) virusa zaire ebolavirus ter identifikacija potencialnih terapevtskih tarč z orodji probis in cmdock
2. Alja Špec: Študija in optimizacija vezave antikalinov na male molekule
3. Aljaž Knez: Analiza gruč kemijskega prostora protibakterijskih učinkovin
4. Benjamin Stradar: Načrtovanje pentapeptidov za vezavo na fc regijo protiteles
5. Deniz Agačević: Študij deskriptorjev molekulske oblike protibakterijskih učinkovin
6. Urška Sušec: Identifikacija prevladujočih skeletov v protibakterijskih učinkovinah
7. Jan Gimpelj: Identifikacija prevladujočih funkcionalnih skupin v protibakterijskih učinkovinah
8. Staša Velcl: Analiza kemijskega prostora, ki ga zavzemajo protibakterijske učinkovine
9. Ines Masten: Detekcija ohranjenih vod na medproteinskih površinah

Other documents (23)

1. Tim Godec, Carissa Bleker, Katja Stare, Tjaša Lukan, Valentina Levak, Magda Tušek-Žnidarič, Tina Kosjek, Katarina Petra Van Midden, Marina Klemenčič, Kristina Sepčić, Maruša Kerenčič, Tina Eleršek, Urban Bren, Marko Jukič, Samo Lešnik, Anže Županič: Functional genomics screening in Chlamydomonas reinhardtii maps the genetic landscape of tolerance to paraquat and diuron
2. Veronika Furlan, Vid Ravnik, Urban Bren, Marko Jukič: Insights into molecular mechanisms of polyphenolic compounds from Helichrysum italicum by inverse molecular docking fingerprint approach
3. Erzsébet Mernyák, Marija Gjorgoska, Maša Sinreih, Aljaž Kotnik, Zala Zanoškar, Ajda Godec, Marko Jukič, Urban Bren, Rebeka Ignácz, Kornél Szőri, Zoltán Kele, Attila Hunyadi, Tea Lanišnik-Rižner: Directed C–H activation of 13α-estrone
4. Alen Čusak, Zdenko Časar, Marko Jukič, Damjan Šterk: Uporaba alilnih intermediatov v novi sintezi heterocikličnega gradnika pitavastatina
5. Andrej Milisavljević, Jure Pražnikar, Urban Bren, Marko Jukič: Cheminformatic analysis of protein surfaces provides binding site insights andinforms identification strategies
6. Anja Kolarič, Marko Jukič, Urban Bren: Machine learning in antiviral drug design
7. Samo Lešnik, Marko Jukič, Urban Bren: Unveiling polyphenol-protein interactions
8. Maria Grazia Mamolo, Emanuele Carosati, Diletta Pasin, Alessandro De Logu, Gianluigi Cabiddu, Marko Jukič, Daniele Zampieri: Synthesis, antimycobacterial activity, and computational insight of novel 1,4-benzoxazin-2-one derivatives as promising candidates against multidrug-resistant mycobacterium tuberculosis
9. Anja Kolarič, Marko Jukič, Urban Bren: Novel small-molecule inhibitors of the SARS-CoV-2 spike protein binding to neuropilin 1
10. Sebastjan Kralj, Marko Jukič, Urban Bren: Commercial SARS-CoV-2 targeted, protease inhibitor focused and protein–protein interaction inhibitor focused molecular libraries for virtual screening and drug design
11. Anja Kolarič, Vid Ravnik, Sara Štumpf Horvat, Marko Jukič, Urban Bren: Identification of furin protease small-molecule inhibitor with a 1,3-thiazol-2-ylaminosulfonyl scaffold
12. Sebastjan Kralj, Marko Jukič, Urban Bren: Molecular Filters in Medicinal Chemistry
13. Vid Ravnik, Marko Jukič, Urban Bren: Identifying Metal Binding Sites in Proteins Using Homologous Structures, the MADE Approach
14. Samo Lešnik, Marko Jukič, Urban Bren: Mechanistic insights of polyphenolic compounds from rosemary bound to their protein targets obtained by molecular dynamics simulations and free-energy calculations
15. Jelena Tošović, Domagoj Fijan, Marko Jukič, Urban Bren: Conserved water networks identification for drug design using density clustering approaches on positional and orientational data
16. Sebastjan Kralj, Marko Jukič, Miha Bahun, Luka Krajnc, Anja Kolarič, Milan Hodošček, Nataša Poklar Ulrih, Urban Bren: Identification of triazolopyrimidinyl scaffold SARS-CoV-2 papain-like protease (PLpro) inhibitor
17. Marko Jukič, Sebastjan Kralj, Anja Kolarič, Urban Bren: Design of Tetra-Peptide Ligands of Antibody Fc Regions Using In Silico Combinatorial Library Screening
18. Matic Broz, Marko Jukič, Urban Bren: Naive prediction of protein backbone phi and psi dihedral angles using deep learning
19. Matic Broz, Anja Kolarič, Marko Jukič, Urban Bren: Neuropilin (NRPs) related pathological conditions and their modulators
20. Matic Broz, Veronika Furlan, Samo Lešnik, Marko Jukič, Urban Bren: The effect of the Ala16Val mutation on the secondary structure of the manganese superoxide dismutase mitochondrial targeting sequence
21. Sebastjan Kralj, Marko Jukič, Urban Bren: Comparative Analyses of Medicinal Chemistry and Cheminformatics Filters with Accessible Implementation in Konstanz Information Miner (KNIME)
22. Marko Jukič, Dušanka Janežič, Urban Bren: Ensemble Docking Coupled to Linear Interaction Energy Calculations for Identification of Coronavirus Main Protease (3CLpro) Non-Covalent Small-Molecule Inhibitors
23. Črtomir Podlipnik, Marko Jukič, Natalia Nikitina, Sebastian Pleško, Lorenzo Gilardoni, Gašper Tomšič, Žan Pevec, Boštjan Laba: COVID.si - Skupnostna znanost za boj proti korona virusu