Statistics of DKUM

Bibliography of the person, including all types of documents, not only theses.

PhD theses (1)

1. Urška Rozman: Molekularne metode za spremljanje kontaminacije bolnišničnih tekstilij

MSc theses (1)

1. Urška Erker: Vpliv prehrane in starosti goveda na kolonizacije s Clostridioides difficile

Other documents (41)

1. Klemen Tršinar, Sabina Mlakar, Franc Janžekovič, Maja Rupnik, Sandra Janežič: High prevalence and clonality of Clostridioides difficile isolates from cryptic clades in household composters and small mammals
2. Aleksander Mahnič, Jennifer Auchtung, Nataša Poklar Ulrih, Robert A. Britton, Maja Rupnik: Microbiota in vitro modulated with polyphenols shows decreased colonization resistance against Clostridioides difficile but can neutralize cytotoxicity
3. Zhenghui Li, Kwok Lee, Urvi Rajyaguru, C. Hal Jones, Sandra Janežič, Maja Rupnik, Annaliesa S. Anderson, Paul Liberator: Ribotype classification of Clostridioides difficile isolates Is not predictive of the amino acid sequence diversity of the toxin virulence factors TcdA and TcdB
4. Miloš Korać, Maja Rupnik, Nataša Nikolić, Milica Jovanović, Tanja Tošić, Jovan Malinić, Nikola Mitrović, Marko Marković, Ankica Vujović, Sanja Peruničić, Ksenija Bojović, Vladimir V. Đorđević, Aleksandra Barać, Ivana Milošević: Clostridioides difficile ribotype distribution in a large teaching hospital in Serbia
5. Urška Dermota, Irena Grmek-Košnik, Sandra Janežič, Maja Rupnik: Changing epidemiology of presumptive community-associated-methicillin-resistant Staphylococcus aureus in Slovenia in 2014-2015 compared to 2010
6. Primož Treven, Aleksander Mahnič, Maja Rupnik, Majda Golob, Tina Pirš, Bojana Bogovič Matijašić, Petra Mohar Lorbeg: Corrigendum: Evaluation of human milk microbiota by 16S rRNA gene next-generation sequencing (NGS) and cultivation/MALDI-TOF mass spectrometry identification
7. Primož Treven, Aleksander Mahnič, Maja Rupnik, Majda Golob, Tina Pirš, Bojana Bogovič Matijašić, Petra Mohar Lorbeg: Evaluation of human milk microbiota by 16S rRNA gene next-generation sequencing (NGS) and cultivation/MALDI-TOF mass spectrometry identification
8. Joanna Wojtacka, Beata Wysok, Aleksander Kocuvan, Maja Rupnik: High contamination rates of shoes of veterinarians, veterinary support staff and veterinary students with Clostridioides difficile spores
9. Tilen Seničar, Andraž Kukovičič, Valerija Tkalec, Aleksander Mahnič, Jernej Dolinšek, Maja Rupnik: Comparison of microbial populations in saliva and feces from healthy and celiac adolescents with conventional and molecular approaches after cultivation on gluten-containing media
10. Lucija Brezočnik, Tanja Žlender, Maja Rupnik, Vili Podgorelec: Using machine learning and natural language processing for unveiling similarities between microbial data
11. Stina Hedžet, Maja Rupnik, Tomaž Accetto: Novel Siphoviridae Bacteriophages infecting Bacteroides uniformis contain diversity generating retroelement
12. Vita Rozman, Petra Mohar Lorbeg, Primož Treven, Tomaž Accetto, Sandra Janežič, Maja Rupnik, Bojana Bogovič Matijašić: Genomic insights into antibiotic resistance and mobilome of lactic acid bacteria and bifidobacteria
13. Valerija Tkalec, Aleksander Mahnič, Peter Gselman, Maja Rupnik: Analysis of seed-associated bacteria and fungi on staple crops using the cultivation and metagenomic approaches
14. Sabina Horvat, Aleksander Mahnič, Damjan Makuc, Klemen Pečnik, Janez Plavec, Maja Rupnik: Children gut microbiota exhibits a different composition and metabolic profile after in vitro exposure to Clostridioides difficile and increases its sporulation
15. Stina Hedžet, Maja Rupnik, Tomaž Accetto: Broad host range may be a key to long-term persistence of bacteriophages infecting intestinal Bacteroidaceae species
16. Tanja Žlender, Maja Rupnik: An overview of molecular markers for identification of non-human fecal pollution sources
17. Mirela Kristo, Liborija Lugović-Mihić, Melba Munoz, Maja Rupnik, Aleksander Mahnič, Petar Ozretić, Morana Jaganjac, Diana Cesić, Matea Kuna: Gut microbiome composition in patients with chronic urticaria
18. Sabina Horvat, Maja Rupnik: How and why to analyze microbiota
19. Tilen Seničar, Andraž Kukovičič: Črevesne bakterije, ki razgrajujejo gluten
20. Matija Primec: Molekularna in fenotipska karakterizacija stafilokokov, izoliranih iz kroničnih ran
21. Špela Pintar: Izolacija in karakterizacija bakterije Clostridium difficile pri hospitaliziranih bolnikih s kronično vnetno črevesno boleznijo
22. Sabina Horvat, Aleksander Mahnič, Martin Breskvar, Sašo Džeroski, Maja Rupnik: Evaluating the effect of Clostridium difficile conditioned medium on fecal microbiota community structure
23. Andrej Golle, Sandra Janežič, Maja Rupnik: Low overlap between carbapenem resistant Pseudomonas aeruginosa genotypes isolated from hospitalized patients and wastewater treatment plants
24. Rodrigo Otávio Silveira Silva, Maja Rupnik, Amanda Nádia Diniz, Eduardo Garcia Vilela, Francisco Carlos Faria Lobato: Clostridium difficile ribotypes in humans and animals in Brazil
25. Anna Oslizlo, Polonca Štefanič, Sabina Vatovec, Sara Beigot Glaser, Maja Rupnik, Ines Mandić-Mulec: Exploring ComQXPA quorum-sensing diversity and biocontrol potential of Bacillus spp. isolates from tomato rhizoplane
26. Mobarak Mraheil, André Billion, Carsten Kuenne, Jordan Pischimarov, Bernd Kreikemayer, Sussane Engelmann, Axel Hartke, Jean-Christophe Giard, Maja Rupnik, Sonja Vorwerk, Markus Beier, Julia Retey, Thomas Hartsch, Anette Jacob, Franz Cemič, Jürgen Hemberger, Trinad Chakraborty, Torsten Hain: Comparative genome-wide analysis of small RNAs of major Gram-positive pathogens
27. Petra Bandelj, Rok Blagus, France Briški, Olga Frlic, Aleksandra Vergles-Rataj, Maja Rupnik, Matjaž Ocepek, Modest Vengušt: Identification of risk factors influencing Clostridium difficile prevalence in middle-size dairy farms
28. N Henning Zaiß, Maja Rupnik, Ed J Kuijper, Celine Harmanus, Dolf Michielsen, Koen Janssens, Ulrich Nübel: Typing Clostridium difficile strains based on tandem repeat sequences
29. Beata Maria Walter, Maja Rupnik, Vesna Hodnik, Gregor Anderluh, Bruno Dupuy, Nejc Paulič, Darja Žgur-Bertok, Matej Butala: The LexA regulated genes of the Clostridium difficile
30. Sandra Janežič, Valerija Tkalec, Bart Pardon, Alexander Indra, Branko Kokotovic, Jose Luis Blanco, Christian Seyboldt, Rodriguez Diaz, Ian Poxton, Vincent Perreten, Ilenia Drigo, Alena Jiraskova, Matjaž Ocepek, Scott Weese, Glenn Songer, Mark Wilcox, Maja Rupnik: International Clostridium difficile animal strain collection and large diversity of animal associated strains
31. Sandra Janežič, Matjaž Ocepek, Valerija Tkalec, Maja Rupnik: Clostridium difficile genotypes other than ribotype 078 that are prevalent among human, animals and environmental isolates
32. Beata Maria Walter, Stephen Cartman, Nigel Peter Minton, Matej Butala, Maja Rupnik: The SOS response master regulator LexA is associated with sporulation, motility and biofilm formation in Clostridium difficile
33. Hedwig Kurka, Armin Ehrenreich, Wolfgang Ludwig, Marc Monot, Maja Rupnik, Frédéric Barbut, Alexander Indra, Bruno Dupuy, Wolfgang Liebl: Sequence similarity of Clostridium difficile strains by analysis of conserved genes and genome content is reflected by their ribotype affiliation
34. Sandra Janežič, Alexander Indra, Thomas Rattei, Thomas Weinmaier, Maja Rupnik: Recombination drives evolution of the Clostridium difficile 16S-23S rRNA intergenic spacer region
35. Sandra Janežič, Mojca Potočnik, Valerija Tkalec, Maja Rupnik: Highly divergent Clostridium difficile strains isolated from the environment
36. Jure Škraban, Sašo Džeroski, Bernard Ženko, Domen Mongus, Simon Gangl, Maja Rupnik: Gut microbiota patterns associated with colonization of different clostridium difficile ribotypes
37. Maja Rupnik, Sara Beigot Glaser, Alenka Andlovic, Ingrid Berce, Tjaša Žohar Čretnik, Bojan Drinovec, Tatjana Harlander, Nadja Orešič, Mateja Ravnik, Iztok Štrumbelj: Prisotnost različnih genotipov bakterije Clostridium difficile pri hospitaliziranih bolnikih v Sloveniji med dvomesečnim zimskim obdobjem
38. Božena Kotnik-Kevorkijan, Marija Klasinc, Slavica Lorenčič Robnik, Živa Petrovič, Maja Rupnik: Diversity of spa types among MRSA isolates from Maribor University hospital
39. Saška Lipovšek Delakorda, Gerd Leitinger, Maja Rupnik: Ultrastructural characteristics of Clostridium difficile colonies
40. Vincenzo Pasquale, Maja Rupnik: Isolation and characterization of Clostridium difficile from shellfish and marine environments
41. Vincenzo Forgetta, Maja Rupnik: Fourteen-genome comparison identifies DNA markers for severe-disease-associated strains of Clostridium difficile